winget install --id Snijderlab.AnnotatorAbout Annotator
A simple tool to help you manually discover the depths of your spectra one spectrum at a time. It can load MGF files (only in centroid mode, also do not forget to deconvolute if you have TD data). Once loaded you can select a scan and add you annotation while tweaking the exact settings for generating the annotation. The annotation itself is interactive to help you discover what the spectrum means. Which you can then export as nice images for use in other environments.
What's new in 1.2.1
- Fixed custom modifications and custom models not being displayed - Fixed print output including unnecessary parts - Updated naming of "folder" button to better reflect it use for Bruker .d data - Better error output + merged identical errors - Added generalised display of flanking residues for identified peptidoforms - Improved support for MaxNovo de novo sequences - Added support for π-HelixNovo, π-PrimeNovo, Proteoscape, and Casanovo v5.0
Version history
| Version | Updated | Notes |
|---|---|---|
| 1.2.1 | Unknown | - Fixed custom modifications and custom models not being displayed - Fixed print output including unnecessary parts - Updated naming of "folder" button to better reflect it use for Bruker .d data - Better error output +... |
| 1.2.0 | Unknown | - Fixed manual not opening & updated manual - Fixed links to open in the default browser - Fixed some identified peptidoform issues (amongst other handle MSFragger files with missing columns) - Fixed custom modification... |
| 1.1.3 | Unknown | - Fixed errors in parsing FragPipe files + added support for MSFragger - Updated mzdata containing fixes for Bruker data - Fixed some more smaller bugs |
| 1.1.2 | Unknown | - Fixed glycan related bugs - Naming of Y ions was inverted, meaning Y6 instead of Y1 - The composition listed for Y composition ions was inverted, listing Hex1 when 1 hexose was lost instead of when 1 hexose was retaine... |
| 1.1.1 | Unknown | - Fixed USI related bugs - Fixed theme related bugs |
| 1.1.0 | Unknown | - Added glycan visualisations both full structures and fragments, in the spectrum, on peptides, and when searching / displaying modifications - Custom models can be saved (and backed up and shared between machines) - Add... |
| 1.0.0 | Unknown | The 1.0 release of Annotator. - Now supports loading MGF, mzML, and Thermo RAW files by using mzdata as dependency. - Updated rustyms to 0.9.0, meaning full support for ProForma 2.0 and many more identified peptide files... |
| 0.2.2 | Unknown | - Major UI overhaul - Updated to rustyms v0.8.3, meaning, amongst others, support for ambiguous amino acids - Support for MaxQuant identified peptides files - Added colour annotations of the spectrum - Added option to sh... |
| 0.2.1 | Unknown | No notes |