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Available on winget

Install AlignCli

A command line interface for easily aligning sequences.

Install with winget
winget install --id Snijderlab.AlignCli
Upgrade
winget upgrade --id Snijderlab.AlignCli
Uninstall
winget uninstall --id Snijderlab.AlignCli

About AlignCli

A command line interface for easily aligning sequences.

What's new in 0.4.2

- Added --either-global - Added PAM30MS scoring matrix - Updated modification display with parents and children and updated cross IDs - Display accession number for IMGT entries - Added mass-based multiple sequence alignment, both when feeding a single PSM file and when given multiple sequences as arguments - Added CSV export - Added pair modes, which gives control over how modifications are scored

Read release notes

Version history

Version Updated Notes
0.4.2 Unknown - Added --either-global - Added PAM30MS scoring matrix - Updated modification display with parents and children and updated cross IDs - Display accession number for IMGT entries - Added mass-based multiple sequence align...
0.4.1 Unknown - Added --full-number to display numbers with more precision - Added --formula <number> to search for molecular formulas with a mass that rounds to the given target - Highlights potential N-glycan sites in the alignment...
0.4.0 Unknown No notes